PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462889955
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family MYB_related
Protein Properties Length: 97aa    MW: 11067.7 Da    PI: 10.1607
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462889955genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.42.5e-161570148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48
                     +g+WT+ Ed ll ++v+q+G g+W+++a+           ++R++k+c++rw +yl
        462889955 15 KGPWTALEDRLLTEYVQQHGEGSWNSVAKLTDspdrsmagLRRSGKSCRLRWVNYL 70
                     79****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.673174IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-211273IPR009057Homeodomain-like
SMARTSM007173.8E-131472IPR001005SANT/Myb domain
PfamPF002492.3E-151570IPR001005SANT/Myb domain
SuperFamilySSF466891.0E-201697IPR009057Homeodomain-like
CDDcd001672.40E-101770No hitNo description
Gene3DG3DSA:1.10.10.601.5E-77497IPR009057Homeodomain-like
PROSITE profilePS512947.5137597IPR017930Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MDSISSLMLQ GGWRKGPWTA LEDRLLTEYV QQHGEGSWNS VAKLTDSPDR SMAGLRRSGK  60
SCRLRWVNYL RPDLKRGKIT PDEETVILQL HAMLGNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-15159727100MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9604503e-59EU960450.1 Zea mays clone 224989 MYB305 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465878.12e-54hypothetical protein SORBIDRAFT_01g047450
SwissprotQ9SSA15e-32MYB57_ARATH; Transcription factor MYB57
TrEMBLC5WYU82e-54C5WYU8_SORBI; Putative uncharacterized protein Sb01g047450
STRINGSb01g047450.16e-54(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132282433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.13e-41myb domain protein 305